PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7275_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 69aa    MW: 8071.13 Da    PI: 6.6784
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7275_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-083302855
                HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox 28 eereeLAkklgLterqVkvWFqNrRake 55
                +e+  LA+++gL+++q+ +WF N+R ++
  RrC7275_p1  3 SEKVALAESTGLDQKQINNWFINQRKRH 30
                57789********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.398133IPR001356Homeobox domain
PfamPF059201.6E-10229IPR008422Homeobox KN domain
CDDcd000862.00E-9234No hitNo description
Gene3DG3DSA:1.10.10.602.1E-15236IPR009057Homeodomain-like
SuperFamilySSF466894.28E-11346IPR009057Homeodomain-like
PROSITE patternPS000270831IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MESEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLQHPHH AALYMDGHYM  60
GDGPYRLGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9700331e-103FJ970033.1 Brassica napus brevipedicellus (bp) gene, partial cds.
GenBankGQ1204491e-103GQ120449.1 Brassica oleracea BREVIPEDICELLUS gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134082.15e-45PREDICTED: homeobox protein knotted-1-like 1 isoform X2
RefseqXP_013623271.11e-44PREDICTED: homeobox protein knotted-1-like 1 isoform X1
RefseqXP_013623272.15e-45PREDICTED: homeobox protein knotted-1-like 1 isoform X2
RefseqXP_013680901.15e-45PREDICTED: homeobox protein knotted-1-like 1 isoform X2
RefseqXP_013680909.11e-44PREDICTED: homeobox protein knotted-1-like 1 isoform X1
RefseqXP_013680910.15e-45PREDICTED: homeobox protein knotted-1-like 1 isoform X2
SwissprotP466392e-46KNAT1_ARATH; Homeobox protein knotted-1-like 1
TrEMBLA0A078H8X79e-46A0A078H8X7_BRANA; BnaC03g28030D protein
STRINGAT4G08150.15e-44(Arabidopsis thaliana)
STRINGBra000638.1-P4e-44(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2888733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-47KNOTTED-like from Arabidopsis thaliana